masgenomics
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maspipeline
masreml
masbayes
Internals
masreml Reference
masreml Reference
Build Pedigree-Based Additive Relationship Matrix
Build SNP Dominance Relationship Matrix
Build Multi-allelic Additive Genomic Relationship Matrix
Build SNP Additive Genomic Relationship Matrix
Compute Genomic Prediction Accuracy and Bias
Cross-Validation for Genomic Prediction Models
Evaluate Out-of-Sample Genomic Prediction
GWAS-Assisted Best Linear Unbiased Prediction (GWABLUP)
Universal REML-BLUP for SNP and Microhaplotype Genomic Prediction
Predict GEBV for New Individuals Using a Fitted masreml Model
Print Cross-Validation Results
Print method for masreml_pred
Run GWAS for SNP or Microhaplotype Markers
Summarize Genomic Prediction Results
Summarize Cross-Validation Results
Extract Variance Components
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masreml Reference
Reference documentation for the
masreml
package.
Functions
build_A_ped
build_D_snp
build_G_mh
build_G_snp
compute_accuracy
cv_masreml
evaluate_prediction
gwablup
masreml
predict.masreml
print.masreml_cv
print.masreml_pred
run_gwas
summary.masreml_cv
summary.masreml
varcomp
Build Pedigree-Based Additive Relationship Matrix